[Last updated 23rd March, 2017]
A healthy and diverse gut bacteria is important for health.
However, an overgrowth of this bacteria in the small intestine – known as SIBO – can cause serious problems.
This article takes a detailed look at SIBO and which dietary changes are scientifically shown to help.
What is SIBO?
Small Intestinal Bacterial Overgrowth (SIBO) is a digestive disorder characterized by excessive bacteria in the small intestine (1).
These bacteria then ferment (interact with food particles and nutrients) to cause a wide range of symptoms.
Unlike the large intestine (also known as the gut or colon) which contains most of your gut bacteria, the small intestine should not have a large amount of bacteria.
SIBO is uncommon in young and middle-aged adults, but thought to occur in at least 14% of older patients on average (2).
Large intestine (colon) is shown in red. Small intestine is shown in pink. Click to enlarge.
Summary: Excessive bacterial growth in the small intestine is known as SIBO. It becomes much more common as we grow older.
Common Risk Factors for SIBO
Researchers suspect SIBO is caused by a combination of decreased pancreatic enzymes, bile acids, and gut motility.
Consequently, certain health conditions or lifestyle choices may increase your risk of developing SIBO:
- Gastrointestinal infections: Such as post-infectious IBS (Irritable Bowel Syndrome)
- Chronic use of antacids: Long-term antacid use (such as omeprazole) reduces acid production in the stomach. Consistently low levels of stomach acid can lead to bacterial overgrowth in the stomach and small intestine (3, 4).
- Immunodeficiency Syndrome: Disorders that can suppress our immune system – such as AIDS and IgA antibody deficiency – provide an ideal environment for harmful bacteria to thrive (5).
- Celiac disease: Celiac disease can disturb how food moves through the intestines, particularly if it remains undiagnosed or is poorly managed. This leads to increased bacterial growth in the gut (6, 7).
- Aging: Older people in general are at increased risk for SIBO because our digestive tract gets weaker with age. This is thought to be caused by reduced physical activity, weight gain, ongoing medication use and general weakening of the gastrointestinal tract (8, 9).
- Alcoholism: Chronic alcohol consumption appears to increase risk of SIBO (10).
Numerous other conditions are linked with increased SIBO risk, but more research is needed. These include hypothyroidism, Crohn’s disease, ulcerative colitis, fibromyalgia, rheumatoid arthritis, Parkinson’s disease and more.
Summary: Your risk of SIBO is greatly increased by several conditions and factors, most often related to reduced function and efficiency of the intestines.
Many SIBO patients experience different signs and symptoms.
These often overlap with other conditions such as IBS. The most common problems are (1):
- Nausea and vomiting
- Bloating and diarrhea
- Poor nutrient absorption leading to deficiencies
- Malnutrition and weight loss.
The intensity of symptoms can differ too.
While some patients may have diarrhea and milder vitamin deficiencies, others may experience severe nutrient malabsorption and impaired digestion (2).
Left unmanaged for several months, SIBO can cause several vitamin and mineral deficiencies.
Vitamin B12 deficiency is one of the most common, alongside the fat-soluble vitamins such as A, D, E and K (2).
Mineral deficiencies such as iron, calcium and magnesium are also common in SIBO patients.
Summary: SIBO symptoms range from digestive stress to severe nutrient deficiencies. They are often similar to IBS.
Diagnosing SIBO: Hydrogen Breath Test
SIBO is a severely under-diagnosed condition (2).
This is because a large portion of our small intestines is impossible to reach without surgery.
Breath Test for SIBO
The two types of Hydrogen Breath Test used for SIBO are the Lactulose Breath Test (LBT) and the Glucose Breath test (GBT).
Both tests measures concentrations of hydrogen and methane in the breath.
While neither is perfect, the LBT seems to be preferred.
How a SIBO breath test works. Click to enlarge. Image source: Sanjosefuncmed.com
These two gases are only produced by bacteria (in the small intestine) and not directly by humans. High levels indicate increased bacterial activity and/or overgrowth.
In order to give an accurate reading, prior to the test patients follow a specialised diet for 1-2 days that does not feed the bacteria. On the day of the test a formulated sugar drink is given in order to get a clear reading of the patient’s reaction to carbohydrates.
The test can be done with take-home kits or with your doctor in the clinic. But interpretation of results should always be with a health care professional.
Summary: The best non-invasive method for diagnosing SIBO is with a Hydrogen Breath Test. It could be worth requesting with your doctor if they have been unable to pinpoint your digestive symptoms.
First Line of Treatment: SIBO and Antibiotics
Conventional treatment for unwanted bacterial growth is antibiotics (2).
Antibiotics are designed to kill bacteria, which is why they are prescribed when you have an infection.
SIBO is no exception, and antibiotics are the first line of treatment.
Rifaximin is the most well-studied antibiotic for SIBO, with a success rate of about 50% after 1 week. A combination of rifaximin and other antibiotic, neomycin, has been shown to be around 85% effective after 10 days (14, 15).
Recommended therapy according to information from a SIBO symposium in 2014:
- Patients with a positive hydrogen breath test: 550 mg rifaximin three times per day for 14 days (not missing any doses).
- Patients with a positive methane breath test: 550 mg rifaximin three times per day + 500 mg neomycin twice a day for 14 days. Alternatively, 550 mg rifaximin three times per day with 250 mg metronidazole three times per day for 14 days.
- Antibiotics treatment should be followed by a prokinetic (enhances intestinal tract motility) for 3 months, a repeat breath test and then a low FODMAP diet (more on that below).
Herbal antibiotics are also a last resort option, with around 50% of patients who fail on rifaximin reporting success with herbal treatment (16). In this particular study it was Dysbiocide and FC Cidal or Candibactin-AR and Candibactin-BR.
Just remember that herbal antibiotics must still be taken under the supervision of your doctor. They can interact with other drugs.
Don’t rely on antibiotics
The problem with antibiotics – pharmaceutical or herbal – is they do not differentiate between good and bad bacteria. They destroy all bacteria.
SIBO antibiotics are also only a temporary “band-aid” treatment, and do not address the root cause of the problem. This is why those only treated with antibiotics are likely to relapse and experience SIBO again (19).
So antibiotics are especially useful in the short-term (and often necessary), but are not a permanent solution, and certainly not a solution themselves.
Summary: Antibiotics are useful (and often necessary) in the short-term to treat SIBO. However, patients who solely rely on them are likely to relapse. They also kill both bad and good bacteria, which is very harmful to health long-term.
Low FODMAP Diet and SIBO
FODMAPs are a type of fermentable carb common in the foods we eat.
They act as necessary “food” for our gut bacteria, but can cause severe digestive problems in sensitive people.
Due to this strong overlap, researchers suspect a low FODMAP diet may be beneficial for SIBO patients too, as it would “starve” the problem bacteria in the small intestine.
Unfortunately, there has not been much research in this area and the current evidence is not clear.
A study on antibiotic therapy alone versus antibiotics plus guar gum supplementation (a fermentable carb) found that success rates were improved from 62% to 87% with the guar gum added (31).
This seems counter-intuitive because it showed the addition of guar gum (which feeds gut bacteria) was more beneficial than harmful. It’s also in line with studies showing probiotics – additional bacteria – are beneficial (more on that below).
It seems the low FODMAP diet is incredibly helpful when starting off, but requires a bit more flexibility for SIBO when reintroducing fermentable carbs.
Just make sure not to start a low FODMAP diet until you have finished your course of antibiotics. The ‘bad’ bacteria need to be active for the antibiotics to work.
Summary: A low FODMAP diet may help initially by “starving” the problem bacteria in the small intestine. But studies have not yet confirmed it as a reliable SIBO treatment.
SIBO and Probiotics
Probiotics is the name given to bacteria we intentionally eat for health benefits.
They are essentially the opposite of antibiotics (20).
It seems counterintuitive to treat SIBO – bacterial overgrowth – with additional bacteria, but recent research has seen success using probiotics instead of antibiotics.
One small study of 14 IBS patients with SIBO found that a daily probiotic drink altered fermentation patterns in the intestine, consistent with reducing SIBO (21).
Another early study found that 82% of patients receiving probiotics for 5 days reported improvements compared to only a 52% improvement in those receiving the antibiotic metronidazol. These findings are in line with previous animal studies that observed similar benefits of probiotics (22, 23).
Until we know more, probitoics are not recommended until after completing the antibiotic protocol and a low FODMAP diet.
Summary: Early studies have found probiotic supplementation may help with SIBO treatment. Its effectiveness has not been proven in clinical trials though, but it’s a promising area. Consider using them after you have completed antibiotic treatment and a low FODMAP diet.
SCD and GAPS Diet Plan for SIBO
There is a lot about gastrointestinal diseases and conditions that science does not yet understand.
SIBO is no exception, which is why the perfect diet plan just doesn’t exist yet. Several potential diets have emerged that are worthy of consideration, but we should be cautious and only trial them under medical supervision.
The following two diets are well-supported by anecdotal evidence (testimonials):
The Specific Carbohydrate Diet (SCD) claims to help treat several forms of bowel disease.
This includes ulcerative colitis, Crohn’s disease, diverticulitis and celiac disease.
- Meat, chicken, fish, eggs, some legumes, lactose-free dairy, ripe fruit, non-starchy vegetables, nuts and seeds, and honey.
Foods not allowed:
- All grains, starchy vegetables (such as potato, corn), regular dairy, some legumes, sugar.
Basically it shares many similarities to the low FODMAP diet, but without the scientific evidence or credibility.
The Gut and Psychology Syndrome diet (GAPS diet) is similar to SCD but with a few modifications.
It contains a different introductory phase, fewer legumes, and dairy protein is reintroduced more slowly.
There is some anecdotal evidence to support it, but these are for autism and other conditions related to brain function (hence the name), rather than digestive issues.
There are no studies of the GAPS diet in the medical literature, and the creator makes a lot of extraordinary claims which is often a red flag.
Summary: The SCD and GAPS diet have emerged as potential diets to help treat SIBO, however neither was actually designed for this condition. They may be useful, but are not evidence-based.
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Overall Recommendation for Diet and SIBO
It reportedly takes about 2 to 5 years on average for SIBO to be completely corrected.
For this reason it’s important to explore the different treatment options and find what works for you. Unfortunately, there is no single diet guaranteed to treat SIBO 100% effectively.
From the weight of evidence, 2 weeks of antibiotics is warranted first in order to deal with acute symptoms and bacterial overgrowth. A prokinetic may be required afterwards.
This should be followed by a low FODMAP diet to identify any food intolerance. The SCD diet is also something worth exploring, as is probiotic supplementation after a low FODMAP diet.
This all needs to be done under the supervision of your doctor and dietitian.